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Comparative studies of natural groups of organisms

           TMV, whereas in icosahedral the protein  enable viruses to crystallise and assume
           subunits are arranged in a form of hollow,  a non-living matter. The capsid, together
           quasi spherical structure, example; Herpes  with the genetic material (DNA or RNA),
           simplex virus.                             constitute a nucleocapsid. Some viruses
                                                      may have additional envelope of lipoprotein
           3.2.2  General structure of viruses        (lipid rich protein) around the capsid. The
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           Viruses are composed of fragments of the   lipoprotein layer is usually derived from the
           genetic material (DNA or RNA), which       cell membrane of the host cell. The viruses
           forms a nucleic acid core.  The DNA        with this layer are called enveloped viruses,
           contains a few genes and can either be     examples are influenza and herpes viruses.
           single or double stranded. The nucleic acid   Those with no envelope are referred to as
           core is enclosed by a protein coat called   naked viruses, for instance, bacteriophage or
           capsid, as in bacteriophage. The capsid is   simply a phage; viruses that attack bacteria
           made up of small identical protein subunits   (Figure 3.1 a, b and c).
           called capsomeres which are structures that
                 Capsid               Envelope protein
            Nucleic acid
            (DNA)                                                                  Nucleic acid
                                                          Viral envelope
                Sheath                                     Reverse
                                                           transcriptase
                Base                                      RNA                       Protein
                                                          Capsule protein
                                                        Matrix protein


                         (a)                     (b)                       (c)

              Figure 3.1: Structure of (a) Bacteriophage (b) the Human Immunodeficiency Virus (HIV) and (c)
                                              Tobacco mosaic virus (TMV)
           3.2.3   Viral replication                  show uniqueness at a certain stage of their
           Viral replication involves formation of  replication due to their ability to convert
           viruses during the infection process, and  their RNA back into a DNA copy. Some
           they replicate only when in living cells;  viruses called lytic phages kill host cells
           that  is,  the  viruses  must  first  get  into  immediately after they enter. On the other
           the host cell before viral replication can  hand, other viruses, such as lambda phages
           occur. Replication among viruses differs  may remain dormant for a long time after
           significantly and depends on the type of  inserting their DNA into the host DNA,
           genes in them. Moreover, most DNA viruses  but they may eventually be activated to
           gather in the nucleus while most RNA  complete their life cycle. These types of
           viruses develop merely in the cytoplasm.   viruses are described as lysogenic phage and
                                                      the dormant stage is called prophage. The
           The life cycle of a bacteriophage          viral replication therefore, occurs in two
           In principle, viral life cycle is the same in   major stages or phases, namely; lysogenic
           all bacteriophages. Retroviruses, such as   and lytic phases or cycles as summarised
           Human Immunodeficiency Viruses (HIV)       in Figure 3.2, and Figure 3.3 respectively.


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